PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g001150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 227aa    MW: 25081.9 Da    PI: 7.2964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g001150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10110157455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen04g001150.1 110 SHSLAERARREKISDRMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 157
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-9104161No hitNo description
SuperFamilySSF474592.09E-17104175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-18106175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.421106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7110157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-10112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPHSTIMSA FQTATNLAEI WPYHHLIDHT TNHAARKRRD DDESAIGVST SGNALTESDS  60
KRLKATRSNE NGEYSGGNSG KSSEQPAKPP AEPPKDYIHV RARRGQATDS HSLAERARRE  120
KISDRMKILQ DLVPGCNKVI GKALVLDEII NYVQSLQRQV EFLSMKLEAV NTRVTPTIEG  180
IPTKDFGQQT FETNAMAFGS QGTREYAGGT SPDWLHMQIG GGFERTT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-98HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074345.11e-172PREDICTED: transcription factor bHLH79-like isoform X2
SwissprotQ9LV172e-61BH079_ARATH; Transcription factor bHLH79
TrEMBLK4BNB91e-169K4BNB9_SOLLC; Uncharacterized protein
STRINGSolyc04g005130.2.11e-168(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-79BIG PETAL P